PUBLICATIONS 2019

Alonso-Serra J, Safronov O, Lim KJ, Fraser-Miller SJ, Blokhina OB, Campilho A, Chong SL, Fagerstedt K, Haavikko R, Helariutta Y, Immanen J, Kangasjärvi J, Kauppila TJ, Lehtonen M, Ragni L, Rajaraman S, Räsänen RM, Safdari P, Tenkanen M, Yli-Kauhaluoma JT, Teeri TH, Strachan CJ, Nieminen K, Salojärvi J. (2019) Tissue-specific study across the stem reveals the chemistry and transcriptome dynamics of birch bark. NEW PHYTOL. 222: 1816-1831

Angeleri M, Muth-Pawlak D, Wilde A, Aro EM, Battchikova N. (2019) Global proteome response of Synechocystis 6803 to extreme copper environments applied to control the activity of the inducible petJ promoter. J APPL MICROBIOL. 126(3):826-841

Brault ML, Petit JD, Immel F, Nicolas WJ, Glavier M, Brocard L, Gaston A, Fouché M, Hawkins TJ, Crowet JM, Grison MS, Germain V, Rocher M, Kraner M, Alva V, Claverol S, Paterlini A, Helariutta Y, Deleu M, Lins L, Tilsner J, Bayer EM. (2019) Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. EMBO REP 20:e47182

Carbonell V, Vuorio E, Aro EM, Kallio P. (2019) Enhanced stable production of ethylene in photosynthetic cyanobacterium Synechoccus elongatus PCC 7942. WORLD J MICROBIOL BIOTECHNOL 35:77

Chen JJ, Wang LY, Immanen J, Nieminen K, Spicer R, Helariutta Y, Zhang J, He XQ. (2019) Differential regulation of auxin and cytokinin during the secondary vascular tissue regeneration in Populus trees. NEW PHYTOL. 224:188-201

Cui F, Brosché M, Shapiguzov A, He XQ, Vainonen JP, Leppälä J, Trotta A, Kangasjärvi S, Salojärvi J, Kangasjärvi J, Overmyer K. (2019) Interaction of methyl viologen-induced chloroplast and mitochondrial signalling in Arabidopsis. FREE RADIC BIOL MED. 134: 555-566.

Ehonen, S., Yarmolinsky, D., Kollist, H. & Kangasjärvi, J. (2019) Reactive Oxygen Species, Photosynthesis, and Environment in the Regulation of Stomata. Antioxidants & Redox Signaling, 30(9), 1220-1237.

Escamez, S., Stael, S., Vainonen, J., Willems, P., Jin, H., Kimura, S., Van Breusegem, F., Gevaert, K., Wrzaczek, M. A. & Tuominen, H. (2019) Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis. Journal of Experimental Botany, 70(7), 2199-2210

Fischer U, Kucukoglu M, Helariutta Y, Bhalerao RP. (2019) The Dynamics of Cambial Stem Cell Activity. ANNU REV PLANT BIOL. 70:293-319

Gerotto C, Trotta A, Bajwa AA, Mancini I, Morosinotto T, Aro EM. (2019) Thylakoid protein phosphorylation dynamics in a moss mutant lacking SERINE/THREONINE PROTEIN KINASE STN8. PLANT PHYSIOLOGY 180:1582-1597

Grabsztunowicz M, Mulo P, Baymann F, Mutoh R, Kurisu G, Sétif P, Beyer P and Krieger-Liszkay A (2019) Electron transport pathways in isolated chromoplasts from Narcissus pseudonarcissus L. PLANT JOURNAL 99(2):245-256

Grebe S, Trotta A, Bajwa AA, Suorsa M, Gollan PJ, Jansson S, Tikkanen M, Aro EM (2019) The unique photosynthetic apparatus of Pinaceae - Analysis of photosynthetic complexes in Norway spruce (Picea abies). J. EXP. BOT. 70:3211-3225

Hakkila K, Valev D, Antal T, Tyystjärvi E and Tyystjärvi T. (2019) Group 2 Sigma Factors Are Central Regulators of Oxidative Stress Acclimation in Cyanobacteria. Plant and Cell Physiology 60:436–447

Hunter, K., Kimura, S., Rokka, A., Huy Cuong Tran, Toyota, M., Kukkonen, J. P. & Wrzaczek, M (2019) CRK2 Enhances Salt Tolerance by Regulating Callose Deposition in Connection with PLDα1. Plant Physiology, 180(4), 2004-2021.

Hellmann E, Helariutta Y. (2019) Plant Genetics: Advances in Regeneration Pathways. CURR BIOL. 29:R702-R704

Huokko T, Muth-Pawlak D, Aro EM. (2019) Thylakoid Localized Type 2 NAD(P)H Dehydrogenase NdbA Optimizes Light-Activated Heterotrophic Growth of Synechocystis sp. PCC 6803. PLANT CELL PHYSIOL. 60:1386-1399

Kalmbach L, Helariutta Y. (2019) Sieve Plate Pores in the Phloem and the Unknowns of Their Formation. PLANTS 8. pii: E25

Kangasjärvi S. (2019) Pic1, counteracting plant immunity signalling. BIOCHEM J. 476:2347-2350

Khorobrykh S, Tsusumaki T, Tanaka K, Tyystjärvi T, Tyystjärvi E. (2019) Measurement of the redox state of the plastoquinone pool in cyanobacteria. FEBS Letters, in press

Kollist H, Zandalinas SI, Senqupta S, Nuhkat M, Kangasjärvi J, Mittler R (2019) Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network. TRENDS PLANT SCI. 24(1):25-37

Lama AD, Klemola T, Tyystjärvi E, Niemelä P, Vuorisalo T. (2019) Physiological and growth responses of Jatropha curcas (L.) seedlings to simulated herbivory and drought stress. SOUTH AFRICAN JOURNAL OF BOTANY 121:486-493

Lima-Melo Y, Alencar VTCB, Lobo AKM, Sousa RHV, Tikkanen M, Aro EM, Silveira JAG, Gollan PJ. (2019) Photoinhibition of Photosystem I Provides Oxidative Protection During Imbalanced Photosynthetic Electron Transport in Arabidopsis thaliana. FRONT PLANT SCI 10:916

Lima-Melo Y, Gollan PJ, Tikkanen M, Silveira JAG, Aro EM. (2019) Consequences of photosystem-I damage and repair on photosynthesis and carbon use in Arabidopsis thaliana. PLANT J. 97:1061-1072
 

Mellor N, Vaughan-Hirsch J, Kümpers BMC, Help-Rinta-Rahko H, Miyashima S, Mähönen AP, Campilho A, King JR, Bishopp A. (2019) A core mechanism for specifying root vascular patterning can replicate the anatomical variation seen in diverse plant species. DEVELOPMENT 146(6)

Miyashima S, Roszak P, Sevilem I, Toyokura K, Blob B, Heo JO, Mellor N, Help-Rinta-Rahko H, Otero S, Smet W, Boekschoten M, Hooiveld G, Hashimoto K, Smetana O, Siligato R, Wallner ES, Mähönen AP, Kondo Y, Melnyk CW, Greb T, Nakajima K, Sozzani R, Bishopp A, De Rybel B, Helariutta Y. (2019) Mobile PEAR transcription factors integrate positional cues to prime cambial growth. NATURE 565(7740):490-494

Murukesan G, Lynch F, Allahverdieyva Y, Kosourov S. (2019) Acclimation responses of immobilized N2-fixing heterocystous cyanobacteria to long-term H2 photoproduction conditions: carbon allocation, oxidative stress and carotenoid production. J. APPLIED PHYCOLOGY 31:131-143

Nikkanen L, Rintamäki E. (2019). Chloroplast thioredoxin systems dynamically regulate photosynthesis in plants. BIOCHEMICAL JOURNAL 476:1159-1172

Rungrat T, Almonte AA, Cheng R, Collan PJ, Stuart T, Aro EM, Borevitz JO, Pogson B, Wilson PB. (2019) A Genome-Wide Association Study of Non-Photochemical Quenching in response to local seasonal climates in Arabidopsis thaliana. PLANT DIRECT. 1-13.

Santana-Sanchez A, Solymosi D, Mustila H, Bersanini L, Aro EM, Allahverdiyeva Y. (2019) Flavodiiron proteins 1-to-4 function in versatile combinations in O2 photoreduction in cyanobacteria. ELIFE 8: e45766

Shapiguzov A, Vainonen JP, Hunter K, Tossavainen H, Tiwari A, Järvi S, Hellman M, Aarabi F, Alseekh S, Wybouw B, Van Der Kelen K, Nikkanen L, Krasensky-Wrzaczek J, Sipari N, Keinänen M, Tyystjärvi E, Rintamäki E, De Rybel B, Salojärvi J, van Breusegem F, Fernie AR, Brosché M, Permi P, Aro EM, Wrzaczek M, Kangasjarvi J. (2019) Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors. ELIFE 8. pii: e43284.

Smet W, Sevilem I, de Luis Balaguer MA, Wybouw B, Mor E, Miyashima S, Blob B, Roszak P, Jacobs TB, Boekschoten M, Hooiveld G, Sozzani R, Helariutta Y, De Rybel B. (2019) DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW. CURR BIOL. 29: 520-529

Smetana O, Mäkilä R, Lyu M, Amiryousefi A, Sánchez Rodríguez F, Wu MF, Solé-Gil A, Leal Gavarrón M, Siligato R, Miyashima S, Roszak P, Blomster T, Reed JW, Broholm S, Mähönen AP. (2019) High levels of auxin signalling define the stem-cell organizer of the vascular cambium. NATURE 565 (7740):485-489

 

Storti M, Alboresi A., Gerotto C., Aro EM, Finazzi G, Morosinotto T. 2019. Role of cyclic and pseudo‐cyclic electron transport in response to dynamic light changes in Physcomitrella patens. Plant, Cell & Environment 42:1590-1

Tadini L, Peracchio C, Trotta A, Colombo M, Mancini I, Jeran N, Costa A, Faoro F, Marsoni M, Vannini C, Aro EM, Pesaresi P. 2019. GUN1 influences the accumulation of NEP-dependent transcripts and chloroplast protein import in Arabidopsis cotyledons upon perturbation of chloroplast protein homeostasis. The Plant Journal, in press

Thiel K, Patrikainen P, Nagy C, Fitzpatrick D, Pope N, Aro EM, Kallio P. 2019. Redirecting photosynthetic electron flux in the cyanobacterium Synechocystis sp. PCC 6803 by the deletion of flavodiiron protein Flv3. Microbial Cell Factories, in press

Trotta A, Ali Bajwa A, Mancini I, Paakkarinen V, Pribil M, Aro EM. 2019. The role of phosphorylation dynamics of CURT1B in plant thylakoid membranes. Plant Physiol, in press

Tenhunen H, Pahikkala T, Nevalainen O, Teuhola J, Mattila H, Tyystjärvi E (2019) Automatic detection of cereal rows by means of pattern recognition techniques. COMPUTERS AND ELECTRONICS IN AGRICULTURE 162:677-688

Vaattovaara A, Brandt B, Rajaraman S, Safronov O, Veidenberg A, Luklová M, Kangasjärvi J, Löytynoja A, Hothorn M, Salojärvi J, Wrzaczek M. (2019) Mechanistic insights into the evolution of DUF26-containing proteins in land plants. COMMUN BIOL. 2:56 

Vaattovaara A, Leppälä J, Salojärvi J, Wrzaczek M. (2019) High-throughput sequencing data and the impact of plant gene annotation quality. J EXP BOT. 70: 1069-1076.

Virtanen O, Valev D, Kruse O, Wobbe L, Tyystjärvi E. (2019) Photoinhibition and continuous gowth of the wild-type and a high-light tolerant strain of Chlamydomonas reinhardtii. PHOTOSYNTHETICA, in press

Walter J, Selim KA, Leganés F, Fernández-Piñas F, Vothknecht UC, Forchhammer K, Aro EM, Gollan PJ. (2019) A novel Ca2+-binding protein influences photosynthetic electron transport in Anabaena sp. PCC 7120. BIOCHEMICA ET BIOPHYSICA ACTA - BIOENERGETICS 1860:519-532

Wang K, Timo Sipilä T, Rajaraman S, Safronov O, Pia Laine P, Auzane A, Mari A, Auvinen P, Paulin L, Kemen E, Salojärvi J, Overmyer K. (2019) A novel phyllosphere resident Protomyces species that interacts with the
Arabidopsis immune system. pre-print on BioRXiv

Wessels B, Seyfferth C, Escamez S, Vain T, Antos K, Vahala J, Delhomme N, Kangasjärvi J, Eder M, Felten J, Tuominen H. (2019) An AP2/ERF transcription factor ERF139 coordinates xylem cell expansion and secondary cell wall deposition. NEW PHYTOL In press

Yan D, Yadav SH, Paterlini A, Nicolas WJ, Petit JD, Brocard L, Belevich I, Grison MS, Vaten A, Karami L, El-Showk S, Lee JY, Murawska GM, Mortimer J, Knoblauch M, Jokitalo E, Markham JE, Bayer EM, Helariutta Y. (2019) Sphingolipid biosynthesis modulates plasmodesmal ultrastructure and phloem unloading. NATURE PLANTS 5: 604-615.

 

 

 

 

 

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Molecular Biology of Primary Producers

An Academy of Finland Centre of Excellence